@article{cisuc-6190-2020,
author={Lucas, P. and Silva, J. and Araujo, F. and Silva, C. and P. Gil and Arrais, J.P. and Coutinho, D. and Salgueiro, P. and Rato, L. and Saias, J. and Nogueira, V. and Alberto Cardoso and Ribeiro, B. },
title={NanoSen-AQM: From Sensors to Users},
journal={International Journal of Online and Biomedical Engineering (iJOE)},
volume={16},
pages={n/a},
number={4},
year=2020,
address={n/a},
}
@article{cisuc-6211-2020,
author={Nelson R. C. Monteiro and Ribeiro, B. and Arrais, J.P. },
title={Drug-Target Interaction Prediction: End-to-End Deep Learning Approach},
journal={IEEE/ACM Transactions on Computational Biology and Bioinformatics},
number={n/a},
pages={1--1},
year=2020,
address={n/a},
}
@article{cisuc-5968-2019,
author={Correia, F.B. and Oliveira, J.L. and Arrais, J.P. },
title={Handling noise in protein interaction networks},
journal={BioMed Research International},
volume={2019},
number={n/a},
pages={n/a},
year=2019,
address={n/a},
}
@article{cisuc-6044-2019,
author={Cruz, A. and Penousal Machado and Arrais, J.P. },
title={CroP—Coordinated Panel visualization for biological networks analysis},
editor={Alfonso Valencia},
journal={Bioinformatics},
number={n/a},
pages={n/a},
year=2019,
address={n/a},
}
@article{cisuc-5396-2018,
author={Cruz, I. and Correia, M. and Barros, M. and rosa, n. and Arrais, J.P. },
title={SalivaPRINT Toolkit--Protein profile evaluation and phenotype stratification},
journal={Journal of proteomics},
volume={171},
number={n/a},
pages={81--86},
year=2018,
address={n/a},
}
@article{cisuc-5632-2018,
author={Cruz, A. and Arrais, J.P. and Penousal Machado },
title={Interactive and coordinated visualization approaches for biological data analysis},
journal={Briefings in bioinformatics},
number={n/a},
pages={n/a},
year=2018,
address={n/a},
}
@article{cisuc-5714-2018,
author={Cruz, A. and Arrais, J.P. and Penousal Machado },
title={Interactive and coordinated visualization approaches for biological data analysis},
journal={Briefings in Bioinformatics},
number={n/a},
pages={n/a},
year=2018,
address={n/a},
}
@article{cisuc-5081-2017,
author={Ribeiro, B. and Oliveira, G. and Laranjeira, A.F.F. and Arrais, J.P. },
title={Deep Learning in Digital Marketing: Brand Detection and Emotion Recognition},
editor={InderScience Publishers},
journal={Machine Intelligence and Sensory Signal Processing, InderScience  Publishers},
volume={2},
number={1},
pages={32--50},
year=2017,
address={n/a},
}
@article{cisuc-5397-2017,
author={Arrais, J.P. and Correia, M. and Barros, M. and rosa, n. },
title={New Targets for Zika Virus Determined by Human-Viral Interactomic: A Bioinformatics Approach},
editor={Hindawi},
journal={BioMed Research International},
volume={2017},
pages={n/a},
number={1734151},
year=2017,
address={n/a},
}
@article{cisuc-4835-2016,
author={Coelho, E.D. and Arrais, J.P. and Oliveira, J.L. },
title={Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction},
journal={PLOS Computational Biology},
number={n/a},
pages={n/a},
year=2016,
address={n/a},
}
@article{cisuc-4837-2016,
author={Arrais, J.P. },
title={Reconstructing the temporal progression of HIV-1 immune response pathways},
journal={Bioinformatics},
volume={32},
number={12},
pages={253--253},
year=2016,
address={n/a},
}
@article{cisuc-4838-2016,
author={Correia, M. and rosa, n. and Arrais, J.P. and Barros, M. },
title={CanisOme—The protein signatures of Canis lupus familiaris diseases},
journal={Journal of proteomics},
volume={136},
number={n/a},
pages={193--201},
year=2016,
address={n/a},
}
@article{cisuc-4421-2015,
author={Coelho, E.D. and Oliveira, J.L. and Santiago, A. and Arrais, J.P. },
title={Computational methodology for predicting the landscape of the human–microbial interactome region level influence},
editor={Imperial College Press},
journal={Journal of bioinformatics and computational biology},
volume={13},
number={05},
pages={15500230},
year=2015,
address={n/a},
}
@article{cisuc-4422-2015,
author={Arrais, J.P. and Oliveira, J.L. },
title={RecRWR: A Recursive Random Walk Method for Improved Identification of Diseases},
editor={Hindawi Publishing Corporation},
journal={BioMed research international},
number={n/a},
pages={n/a},
year=2015,
address={n/a},
}
@article{cisuc-4171-2014,
author={Coelho, E.D. and Arrais, J.P. and Oliveira, J.L. and rosa, n. and Correia, M. and Matos, S. and Pereira, C. },
title={Computational prediction of the human-microbial oral interactome},
editor={BMC},
journal={BMC Systems Biology},
number={n/a},
pages={n/a},
year=2014,
address={n/a},
}
@article{cisuc-4172-2014,
author={Oliveira, J.L. and Arrais, J.P. },
title={geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification},
journal={BMC bioinformatics},
number={n/a},
pages={n/a},
year=2014,
address={n/a},
}
@article{cisuc-4173-2014,
author={Arrais, J.P. and Oliveira, J.L. },
title={RecRWR: A Recursive Random Walk Method for Improved Identification of Diseases},
journal={BioMed Research International},
number={n/a},
pages={n/a},
year=2014,
address={n/a},
}
@article{cisuc-3552-2013,
author={Arrais, J.P. and Coelho, E.D. and Oliveira, J.L. },
title={From Protein-Protein Interactions to Rational Drug Design: Are Computational Methods Up to the Challenge?},
editor={Bentham Science Publishers},
journal={Current Topics in Medicinal Chemistry},
volume={13},
number={5},
pages={602--618},
year=2013,
address={n/a},
}
@article{cisuc-3553-2013,
author={Arrais, J.P. and Coelho, E.D. and Oliveira, J.L. and rosa, n. and Correia, M. },
title={OralCard: A bioinformatic tool for the study of oral proteome},
journal={Archives of Oral Biology},
volume={58},
number={7},
pages={762--772},
year=2013,
address={n/a},
}
@inproceedings{cisuc-6214-2020,
author={Pereira, T. and Maryam Abbasi and Ribeiro, B. and Arrais, J.P. },
title={Deep Reinforcement Learning for Optimized Drug Design},
booktitle={Bioinformatics Open Days},
year=2020,
address={n/a},
}
@inproceedings{cisuc-6216-2020,
author={Torres, L.H.M. and Nelson R. C. Monteiro and Ribeiro, B. and Arrais, J.P. },
title={Siamese Neural Networks for One-Shot Drug Discovery},
booktitle={Bioinformatics Open Days (BOD) 2020},
year=2020,
address={n/a},
}
@inproceedings{cisuc-5883-2019,
author={Silva, J. and Lucas, P. and Araujo, F. and Silva, C. and P. Gil and Alberto Cardoso and Arrais, J.P. and Ribeiro, B. and Coutinho, D. and Salgueiro, P. and Rato, L. and Saias, J. and Nogueira, V. },
title={A Hybrid Application for Real-Time Air Quality Monitoring},
booktitle={2019 5th Experiment International Conference (exp.at'19)},
year=2019,
address={n/a},
}
@inproceedings{cisuc-5885-2019,
author={Silva, J. and Lucas, P. and Araujo, F. and Silva, C. and P. Gil and Alberto Cardoso and Arrais, J.P. and Ribeiro, B. and Coutinho, D. and Salgueiro, P. and Rato, L. and Saias, J. and Nogueira, V. },
title={An Online Platform For Real-Time Air Quality Monitoring},
booktitle={2019 5th Experiment International Conference (exp.at'19)},
year=2019,
address={n/a},
}
@inproceedings{cisuc-5941-2019,
author={Nelson R. C. Monteiro and Ribeiro, B. and Arrais, J.P. },
title={Deep Neural Network Architecture for Drug-Target Interaction Prediction},
booktitle={Artificial Neural Networks and Machine Learning – ICANN 2019},
year=2019,
address={n/a},
}
@inproceedings{cisuc-6033-2019,
author={Coutinho, D. and Salgueiro, P. and Saias, J. and Rato, L. and Nogueira, V. and Silva, J. and Lucas, P. and Araujo, F. and Silva, C. and P. Gil and Alberto Cardoso and Arrais, J.P. and Ribeiro, B. },
title={Considerations for a cloud-based system for IoT data acquisition from heterogeneous sensors},
booktitle={III CONGRESSO LUSO-EXTREMADURENSE},
year=2019,
address={n/a},
}
@inproceedings{cisuc-6212-2019,
author={Maryam Abbasi and Ribeiro, B. and Arrais, J.P. },
title={Deep Recurrent Networks for Molecular Drug Design},
booktitle={RECPAD2019},
year=2019,
address={n/a},
}
@inproceedings{cisuc-6217-2019,
author={Nelson R. C. Monteiro and Ribeiro, B. and Arrais, J.P. },
title={Drug-Target Interaction Prediction: End-to-End Deep Learn-ing Approach},
booktitle={Bioinformatics Open Days (BOD) 2019},
year=2019,
address={n/a},
}
@inproceedings{cisuc-6218-2019,
author={Nelson R. C. Monteiro and Ribeiro, B. and Arrais, J.P. },
title={End-to-End Deep Learning Approach for Drug-Target Interaction Prediction},
booktitle={Ciência2019},
year=2019,
address={n/a},
}
@inproceedings{cisuc-5633-2018,
author={Arrais, J.P. and Coelho, E.D. and Oliveira, J.L. },
title={Fighting Fire with Fire: Computational Prediction of Microbial Targets for Bacteriocins},
booktitle={International Conference on Bioinformatics and Biomedical Engineering},
year=2018,
address={n/a},
}
@inproceedings{cisuc-5645-2018,
author={Pedro Henriques Abreu and Martins, P. and Penousal Machado and Arrais, J.P. and Gomes, A. },
title={The Relationship Between Learning Styles and Creativity Students: An Information Visualization Class Case Study},
booktitle={EdMedia: World Conference on Educational Media and Technology, pp.1246-1255},
year=2018,
address={n/a},
}
@inproceedings{cisuc-5715-2018,
author={Cruz, A. and Arrais, J.P. and Penousal Machado },
title={Interactive Network Visualization of Gene Expression Time-Series Data},
booktitle={iV2018 – 22nd International Conference Information Visualisation},
year=2018,
address={n/a},
}
@inproceedings{cisuc-5769-2018,
author={Albuquerque, J. and Pereira, C. and Arrais, J.P. },
title={Analysis of Auto-encoders for Feature Representation of Protein Sequences},
booktitle={24th Portuguese Conference on Pattern Recognition},
year=2018,
address={n/a},
}
@inproceedings{cisuc-6219-2018,
author={Nelson R. C. Monteiro and Ribeiro, B. and Arrais, J.P. },
title={Drug-Target Interaction Prediction: End-to-End Deep Learning Approach},
booktitle={EJIBCE2018},
year=2018,
address={n/a},
}
@inproceedings{cisuc-5191-2017,
author={Polisciuc, E. and Cruz, A. and Penousal Machado and Arrais, J.P. },
title={On the Role of Aesthetics in Genetic Algorithms Applied to Graph Drawing},
booktitle={Proceedings of the Genetic and Evolutionary Computation Conference Companion},
year=2017,
address={n/a},
}
@inproceedings{cisuc-5398-2017,
author={Arrais, J.P. and António Dourado and Santiago, A. and Rocha, M. },
title={Mixed-Integer Programming Model for Profiling Disease Biomarkers from Gene Expression Studies},
booktitle={IWBBIO 2017: Bioinformatics and Biomedical Engineering},
year=2017,
address={n/a},
}
@inproceedings{cisuc-4836-2016,
author={Arrais, J.P. and Oliveira, J.L. and Coelho, E.D. },
title={Ensemble-Based Methodology for the Prediction of Drug-Target Interactions},
booktitle={Computer-Based Medical Systems (CBMS), 2016 IEEE 29th International Symposium on},
year=2016,
address={n/a},
}
@inproceedings{cisuc-4839-2016,
author={Correia, F.B. and Arrais, J.P. and Oliveira, J.L. },
title={Prediction of Cancer using Network Topological Features},
booktitle={Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies},
year=2016,
address={n/a},
}
@inproceedings{cisuc-4423-2015,
author={Arrais, J.P. and Coelho, E.D. and Oliveira, J.L. },
title={Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions},
booktitle={Engineering in Medicine and Biology Society (EMBC), 2015 37th Annual International Conference of the IEEE},
year=2015,
address={n/a},
}
@inproceedings{cisuc-4174-2014,
author={Arrais, J.P. },
title={Metagenomic Analysis of the Saliva Microbiome with Merlin},
booktitle={8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014)},
year=2014,
address={n/a},
}
@inproceedings{cisuc-4175-2014,
author={Arrais, J.P. and Oliveira, J.L. },
title={A Cytoscape-Based Web Tool for Representing Protein Networks},
booktitle={The International Conference on Health Informatics},
year=2014,
address={n/a},
}
@inproceedings{cisuc-4176-2014,
author={Arrais, J.P. and Oliveira, J.L. and Barbosa, F. },
title={Weighted Gene Co-expression Network Analysis Applied to Head and Neck Squamous Cell Carcinoma Data},
booktitle={The International Conference on Health Informatics},
year=2014,
address={n/a},
}
@inproceedings{cisuc-3554-2013,
author={Arrais, J.P. and Oliveira, J.L. and Barbosa, F. },
title={Quantitative Characterization of Protein Networks of the Oral Cavity},
booktitle={7th International Conference on Practical Applications of Computational Biology & Bioinformatics},
year=2013,
address={n/a},
}