Journal Articles
2017(1 publication)
[publication]Martins, P.M.O. and Cruz, I. and Cecílio, J. and Maryam Abbasi and Furtado, P. , "Approaches for image segmentation applied to food",  International Journal of Applied Pattern Recognition ,  vol. 4, 2017

2016(1 publication)
[publication]Maryam Abbasi and Paquete, L. and Pereira, F.B. , "Heuristics for multiobjective multiple sequence alignment", BioMedical Engineering Online,  vol. 15, 2016
[citation][year=2016]Franscisco M. OrtuñoEmail author, Olga Valenzuela, Peter Glösekötter and Ignacio Rojas, Main findings and advances in biomedical engineering and bioinformatics from IWBBIO 2015, BioMedical Engineering OnLine 2016, 15(Suppl 1):79
[citation][year=2016]R. Ranjani Rani, D. Ramyachitra, Multiple sequence alignment using multi-objective based bacterial foraging optimization algorithm, Biosystems, Volume 150, December 2016, Pages 177-189
[citation][year=2016]Cristian Zambrano-Vega, Miriam Cárdenas-Zea, Ricardo Aguirre-Pérez, A Multi-Objective approach to the optimization of Multiple Sequence Alignment (MSA), Latin American Journal of Computing, Vol 3, number 1.

2014(1 publication)
[publication]Paquete, L. and Matias, P. and Maryam Abbasi and Monsanto, M. , "MOSAL: Software tools for multiobjective sequence alignment", Source Code for Biology and Medicine,  vol. 9, 2014
[citation][year=2015]RS Segall, JS Cook, Q Zhang
Research and Applications in Global Supercomputing
Advances in Systems Analysis, Software Engineering, and High Performance Computing, IGI Global, 2015

2013(1 publication)
[publication]Maryam Abbasi and Paquete, L. and Liefooghe, A. and Monsanto, M. and Matias, P. , "Improvements on bicriteria pairwise sequence alignment: algorithms and applications", Bioinformatics,  vol. 29,  pp. 996-1003, 2013
[citation][year=2015]DA Morrison
Is sequence alignment an art or a science?
Systematic Botany, 2015

Conference Articles
2020(2 publications)
[publication]Pereira, T. and Maryam Abbasi and Ribeiro, B. and Arrais, J.P. , "Deep Reinforcement Learning for Optimized Drug Design", in Bioinformatics Open Days, 2020

[publication]Maryam Abbasi and Martins, P.M.O. , "An Overview of Search and Match Algorithms Complexity and Performance", in International Work-Conference on Bioinformatics and Biomedical Engineering, 2020

2019(2 publications)
[publication]Maryam Abbasi and Ribeiro, B. and Arrais, J.P. , "Deep Recurrent Networks for Molecular Drug Design", in RECPAD2019, 2019

[publication]Martins, P.M.O. and Maryam Abbasi and Sá, F. , "A study over NoSQL performance", in World Conference on Information Systems and Technologies, 2019

2018(2 publications)
[publication]Maryam Abbasi and Sá, F. and Caldeira, F. and Tomé, P. and Furtado, P. and Wanzeller, C. and Martins, P.M.O. , "NoSQL Scalability Performance Evaluation over Cassandra", in International Conference Europe Middle East & North Africa Information Systems and Technologies to Support Learning, 2018

[publication]Maryam Abbasi and Martins, P.M.O. and Cecílio, J. and Furtado, P. , "SINGLE vs. MapReduce vs. Relational: Predicting Query Execution Time", in International Conference: Beyond Databases, Architectures and Structures, 2018

2017(1 publication)
[publication]Martins, P.M.O. and Maryam Abbasi and Cecílio, J. and Furtado, P. , "Integrating Map-Reduce and Stream-Processing for Efficiency (MRSP)", in International Conference: Beyond Databases, Architectures and Structures, 2017

2016(4 publications)
[publication]Martins, P.M.O. and Maryam Abbasi and Furtado, P. , "AScale: Auto-Scale in and out ETL+Q Framework", in BDAS 2016 : 12th International Conference Beyond Databases, Architectures and Structures , 2016

[publication]Martins, P.M.O. and Maryam Abbasi and Furtado, P. , "AScale: Big/Small Data ETL and Real-Time Data Freshness", in BDAS 2016 : 12th International Conference Beyond Databases, Architectures and Structures , 2016

[publication]Martins, P.M.O. and Cecílio, J. and Maryam Abbasi and Furtado, P. , "GISB: A Benchmark for Geographic Map Information Extraction", in BDAS 2016 : 12th International Conference Beyond Databases, Architectures and Structures, 2016

[publication]Martins, P.M.O. and Cecílio, J. and Maryam Abbasi and Furtado, P. , "GPII: A Benchmark for Generic Purpose Image Information", in C3S2E '16 - 9th International C* Conference on Computer Science & Software Engineering , 2016

2015(1 publication)
[publication]Maryam Abbasi and Paquete, L. and Pereira, F.B. , "Local search for multiobjective multiple sequence alignment", in 3th Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2015),  LNCS 9044, 175-182, Springer, 2015

2012(1 publication)
[publication]Maryam Abbasi and Paquete, L. , "Dynamic Programming Algorithms for Biobjective Sequence Alignment", in Bioinformatics Open Days, 40, 2012

PhD Theses
2019(1 publication)
[publication]Maryam Abbasi , "Multiobjective sequence alignment: Formulation, algorithms and application", 2019