MOSAL - Multiobjective Sequence Alignment

Description

Sequence alignment is in the core of many Bioinformatics applications. It aims to identify regions of similarity in sequences of biological data, such as nucleotide and amino acid residues.

Researchers

Luis Paquete (coordinator)
Francisco Baptista Pereira
José Figueira

Funded by

FCT

Total budget

77 000,00 €

Start Date

2010-04-01

End Date

2013-04-01

Journal Articles

2016

(1 publication)

Maryam Abbasi and Paquete, L. and Pereira, F.B. , "Heuristics for multiobjective multiple sequence alignment", BioMedical Engineering Online, vol. 15, 2016

2014

(1 publication)

Paquete, L. and Matias, P. and Maryam Abbasi and Monsanto, M. , "MOSAL: Software tools for multiobjective sequence alignment", Source Code for Biology and Medicine, vol. 9, 2014

2013

(1 publication)

Maryam Abbasi and Paquete, L. and Liefooghe, A. and Monsanto, M. and Matias, P. , "Improvements on bicriteria pairwise sequence alignment: algorithms and applications", Bioinformatics, vol. 29, pp. 996-1003, 2013

Conference Articles

2012

(1 publication)

Maryam Abbasi and Paquete, L. , "Dynamic Programming Algorithms for Biobjective Sequence Alignment", in Bioinformatics Open Days, 40, 2012

PhD Theses

2019

(1 publication)

Maryam Abbasi , "Multiobjective sequence alignment: Formulation, algorithms and application", 2019

Tech Report

2013

(1 publication)

Schenker, S. and Paquete, L. , "BiMuSA: An implementation for biobjective multiple sequence alignment problems ", 2013