People
José Luís Oliveira
National Projects
D4 - Deep Drug Discovery and Deployment (PI: Bernardete Ribeiro; co-PI: Joel P. Arrais)
Journal Articles
2019
(1 publication)- Correia, F.B. and Oliveira, J.L. and Arrais, J.P. , "Handling noise in protein interaction networks", BioMed Research International, vol. 2019, 2019 [ DOI ]
2016
(1 publication)- Coelho, E.D. and Arrais, J.P. and Oliveira, J.L. , "Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction", PLOS Computational Biology, 2016 [ DOI ]
2015
(2 publications)- Coelho, E.D. and Oliveira, J.L. and Santiago, A. and Arrais, J.P. , "Computational methodology for predicting the landscape of the human–microbial interactome region level influence", Journal of bioinformatics and computational biology, vol. 13, pp. 1550023, 2015 [ DOI ]
- Arrais, J.P. and Oliveira, J.L. , "RecRWR: A Recursive Random Walk Method for Improved Identification of Diseases", BioMed research international, 2015 [ DOI ]
2014
(3 publications)- Coelho, E.D. and Arrais, J.P. and Oliveira, J.L. and rosa, n. and Correia, M. and Matos, S. and Pereira, C. , "Computational prediction of the human-microbial oral interactome", BMC Systems Biology, 2014 [ DOI ]
- Oliveira, J.L. and Arrais, J.P. , "geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification", BMC bioinformatics, 2014 [ DOI ]
- Arrais, J.P. and Oliveira, J.L. , "RecRWR: A Recursive Random Walk Method for Improved Identification of Diseases", BioMed Research International, 2014 [ DOI ]
2013
(2 publications)- Arrais, J.P. and Coelho, E.D. and Oliveira, J.L. , "From Protein-Protein Interactions to Rational Drug Design: Are Computational Methods Up to the Challenge?", Current Topics in Medicinal Chemistry, vol. 13, pp. 602-618, 2013 [ DOI ]
- Arrais, J.P. and Coelho, E.D. and Oliveira, J.L. and rosa, n. and Correia, M. , "OralCard: A bioinformatic tool for the study of oral proteome", Archives of Oral Biology, vol. 58, pp. 762-772, 2013 [ DOI ]
Conference Articles
2018
(1 publication)2016
(2 publications)- Arrais, J.P. and Oliveira, J.L. and Coelho, E.D. , "Ensemble-Based Methodology for the Prediction of Drug-Target Interactions", in Computer-Based Medical Systems (CBMS), 2016 IEEE 29th International Symposium on, 2016 [ DOI ]
- Correia, F.B. and Arrais, J.P. and Oliveira, J.L. , "Prediction of Cancer using Network Topological Features", in Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies, 2016 [ DOI ]
2015
(1 publication)- Arrais, J.P. and Coelho, E.D. and Oliveira, J.L. , "Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions", in Engineering in Medicine and Biology Society (EMBC), 2015 37th Annual International Conference of the IEEE, 2015 [ DOI ]
2014
(2 publications)- Arrais, J.P. and Oliveira, J.L. , "A Cytoscape-Based Web Tool for Representing Protein Networks", in The International Conference on Health Informatics, 2014
- Arrais, J.P. and Oliveira, J.L. and Barbosa, F. , "Weighted Gene Co-expression Network Analysis Applied to Head and Neck Squamous Cell Carcinoma Data", in The International Conference on Health Informatics, 2014